Package: hatchR 0.3.2.9000
hatchR: Predict Fish Hatch and Emergence Timing
Predict hatch and emergence timing for a wide range of wild fishes using the effective value framework (Sparks et al., (2019) <doi:10.1139/cjfas-2017-0468>). 'hatchR' offers users access to established phenological models and the flexibility to incorporate custom parameterizations using external datasets.
Authors:
hatchR_0.3.2.9000.tar.gz
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hatchR.pdf |hatchR.html✨
hatchR/json (API)
NEWS
| # Install 'hatchR' in R: |
| install.packages('hatchR', repos = c('https://bmait101.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bmait101/hatchr/issues
Pkgdown site:https://bmait101.github.io
- crooked_river - Example dataset: Crooked River, Idaho
- idaho - Central Idaho Water Temperature Data
- model_table - Table of phenology models
- woody_island - Example dataset: Woody Island, Lake Iliamna, Alaska
Last updated 2 days agofrom:3b83802098. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 13 2025 |
| R-4.5-win | OK | Mar 13 2025 |
| R-4.5-mac | OK | Mar 13 2025 |
| R-4.5-linux | OK | Mar 13 2025 |
| R-4.4-win | OK | Mar 13 2025 |
| R-4.4-mac | OK | Mar 13 2025 |
| R-4.4-linux | OK | Mar 13 2025 |
| R-4.3-win | OK | Mar 13 2025 |
| R-4.3-mac | OK | Mar 13 2025 |
Exports:check_continuousfit_modelmodel_selectplot_check_tempplot_phenologypredict_phenologysummarize_temp
Dependencies:clicolorspacecommonmarkcpp11curldplyrfansifarvergenericsggplot2ggtextgluegridtextgtableisobandjpeglabelinglatticelifecyclelubridatemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigpngR6RColorBrewerRcpprlangscalesstringistringrtibbletidyselecttimechangeutf8vctrsviridisLitewithrxfunxml2
Advanced plotting
Rendered fromAdvanced_plotting.Rmdusingknitr::rmarkdownon Mar 13 2025.Last update: 2025-02-28
Started: 2024-11-22
Introduction
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Started: 2024-11-18
Model bibliography
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Parameterize hatchR Models
Rendered fromParameterize_models.Rmdusingknitr::rmarkdownon Mar 13 2025.Last update: 2025-02-28
Started: 2024-11-20
Predict fish phenology: advanced
Rendered fromPredict_phenology_advanced.Rmdusingknitr::rmarkdownon Mar 13 2025.Last update: 2025-02-07
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Predict fish phenology: basic
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Started: 2024-11-20
Predict fish phenology: nested
Rendered fromPredict_phenology_nested.Rmdusingknitr::rmarkdownon Mar 13 2025.Last update: 2025-02-07
Started: 2024-11-22
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check if the dates in a data frame are continuous. | check_continuous |
| Example dataset: Crooked River, Idaho | crooked_river |
| Fit B&M model 2 to new data using 'stats::nls()' | fit_model |
| Central Idaho Water Temperature Data | idaho |
| Select a development model structure | model_select |
| Table of phenology models | model_table |
| Visual check of imported temperature data | plot_check_temp |
| Visualize fish phenology | plot_phenology |
| Predict phenology of fish | predict_phenology |
| Summarize temperature data to daily values | summarize_temp |
| Example dataset: Woody Island, Lake Iliamna, Alaska | woody_island |
